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Genomics and Computational Biology >> Content Detail



Assignments



Assignments

Problem sets (including full program source code and output) are to be submitted before the start of the lecture listed below. Answers are posted 48 hours later. Problems may be done collaboratively but each student should work hard on every problem. Students should state clearly the contributions of everyone involved or that they worked alone. This section contains downloadable files that require Microsoft Excel (ending with .xls) or a program able to read text files (those ending in .pl, .nb, and .txt). Mathematica® software is required to run the .nb files in this section. Microsoft® Excel software is recommended for viewing the .xls files in this section. Free Microsoft® Excel viewer software can also be used to view the .xls files.





PROBLEM SETS & ASSOCIATED FILESPROBLEM SET ANSWERS & EXPLANATIONS
Set 1 Questions (PDF)

Set 1 Answers

  • Biology (PDF)
  • Perl (PL)
  • Perl Bonus (PL)
  • Mathematica (NB)
Set 2 Questions (PDF)Set 2 Answers (PDF)
Set 3 Questions (PDF) Set 3 Answers (PDF)
Set 4 Questions (PDF)
  • Hierarchical File (PDF)
  • ps4-1-template File (PL)
  • Sample Dataset of 5 Samples (TXT)
  • Clustering Result of Sample Dataset Using Complete-linkage Euclidean Distance (TXT)
  • Normalized Training Dataset (TXT)
  • Clustering Result of Normalized Training dataset Using Complete/Single-linkage Euclidean distance (TXT)
Set 4 Answers (PDF)
Set 5 Questions (PDF)

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


Microsoft® is a registered trademark or trademark of Microsoft Corporation in the U.S. and/or other countries.
Mathematica® is a registered trademark of Wolfram Research, Inc.

 


 



 








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